Genetic diversity and its implications in tlie conservation of threatened fish species Barilius bendelisis (Hamilton)

Jump To References Section

Authors

  • ,IN
  • ,IN
  • ,IN
  • ,IN
  • ,IN
  • ,IN

DOI:

https://doi.org/10.18311/jeoh/2010/18329

Keywords:

Barilius bendelisis, RAPD, Genetic diversity, Polymorphism

Abstract

Genetic diversity in four populations of the hill stream teleost Barilius bendelisis, a threatened fish
species in India, from Ramnagar (Kosi), Srinagar (Alal<nanda), Dehradun (Yamuna) and Bhimtal (Chanfee) Uttarakhand, was studied using Random Amplified Polymorphic DNA (RAPD) markers for the first time in
India. Four selective primers provided distinct and consistent RAPD profiles in all the four populations. Upon
screening 40 random decamer primers four primers giving reproducible results were selected and used for
generating DNA fingerprints from a total of 48 fish samples collected from the above-mentioned streams.
The bands in the range 666-4830 bp were scored for consistent results. A total of 30 loci were scored, 12
of which were found to be polymorphic in nature. The mean values of Nei's gene diversity and Shannon's
information index were found 0.1899 and 0.2617 respectively indicating an average level of genetic diversity
in the studied samples of the threatened species. The RAPD profiles generated by all the four primers revealed
varying degrees of polymorphism, ranging from 25% (primer OPH03) to 45.45% (primer OPA09). The overall
oroportion of polymorphic bands and genetic diversity (h) among the four populations was observed 40% and
0.1899.

Downloads

Download data is not yet available.

Metrics

Metrics Loading ...

Author Biographies

Akhilesh K. Mishra

National Bureau of Fish Genetic Resources, P.O. Dilkusha, Lucknow-226002

W.S. Lakra

Central Institute of Fisheries Education, Mumbai

J. P. Bhatt

Deptt. of Zoology and Biotechnology, H.N.B. Garhwal University, Srinagar Garhwal

M. Goswami

National Bureau of Fish Genetic Resources, P.O. Dilkusha, Lucknow-226002

N.S. Nagpure

National Bureau of Fish Genetic Resources, P.O. Dilkusha, Lucknow-226002

Vineet K. Dubey

National Bureau of Fish Genetic Resources, P.O. Dilkusha, Lucknow-226002

Published

2017-12-06

How to Cite

Mishra, A. K., Lakra, W., Bhatt, J. P., Goswami, M., Nagpure, N., & Dubey, V. K. (2017). Genetic diversity and its implications in tlie conservation of threatened fish species Barilius bendelisis (Hamilton). Journal of Ecophysiology and Occupational Health, 10(3-4), 149–155. https://doi.org/10.18311/jeoh/2010/18329

 

References

Ashbaugh, N. A., Echelle, A. A. and Echelle, A. F. (1994) Genetic diversity in red river pupfish Cyprinodonrubrofluviatilis (Atheriniformes, Cyprinodontidae) and its implications for the conservation genetics of the species. J. Fish Biol., 45, 291-302.

Ayoma, J., Watanbe, S., Nishida, M. and Tsui

Brahmane, M.P., Das, M.K., Singh, M.R., Sugunan, V.V. and Mukharjee A. (2006) Use of RAPD fingerprinting for the delineating populations of Hilsa shad Tenualosa ilisha (Hamilton, 1822). Genet. Mol. Res., 5, 643-652.

CAMP (1998) Report of the workshop Conservation Assessment and Management Plan (CAMP) for freshvt/ater fishes of India, organized by Zoo Outreach Organization and National Bureau of Fish Genetic Resources, Lucknow, held at NBFGR in September 1997. Zoo Outreach Organization, Coimbatore, India. 156pp.

Carvalho G.R. and Hauser L (1994) Molecular genetics and the stock concept in fisheries. Rev. Fish Biol. Fisheries, 4, 326-350.

Das, P. and Pandey, A.K. (1998) Current status of fish germplasm resource of India and strategies for conservation of endangered species. Ponniah, A.G. and Das, P. (eds) Fish Genetics and Biodiversity Conservation, pp 253-273.

Dinesh, K.R., Chan,W.K., Lim T.M. and Phang, V.P.E.(1995) RAPD markers in fishes: an evaluation of resolution and reproducibility. Asia Paciric J. Mol. Bio. Biotechnol., 3, 112- 118.

Ferguson, A., Taggart, J. B., Prodohl, P. A., McMeel, O., Thompson, C, Stone,C., McGinnity, P. and Hynes, R.A. (1995) The applications of molecular markers to the study and conservation of fish populations with special reference to Salmo. J. Fish Biol. 47, 103-126.

Garg, R.K., Silawat, N., Sairkar, P. Vijay, N. and Mehrotra, N.N. (2009) RAPD analysis for genetic diversity of two populations of Mystus vittatus (Bloch) of Madhya Pradesh, India. Afr. J. Biotechnol. 8, 4032-4038.

Kirchhoff, S., Sevigny, J. M. and Couillard, C. M. (1999) Genetic and meristic variations in the mummichog Fundulus heteroclitus, living in polluted and reference estuaries. Mar. Evimnm. Res. 47, 261-283.

Krane, Dan E., David, C, Sternberg and Allen Burton, G.(1999) Randomly amplified polymorphic DNA profile - base measures of genetic diversity in Crayfish correlated with environmentcJi impacts. Environm. Toxicol. Chemist. 18, 504-508.

Lakra, W.S., Goswami, M., Mohindra, V., Lai, K.K. and Punia, P. (2007) Molecular identification of five Indian sciaenids (Pisces: Perciformes, Sciaenidae) using RAPD markers. Hydmbiologia. 583, 359-363.

Lee, W. Ott and Krane, Dan E. (2000) RAPD-PCR Genetic diversity measure of Pacific Herring population health. Symposia papers presented before the division of Environmental Chemistry, American Chemical Society Washington D.C. pp 750-751.

Lewontin, R.C. (1972) The apportionment of human diversity. Evolutionary Biol., 6, 381-398.

Meruane, J., Takagi, M., and Taniguchi, N. (1997) Species identification and polymorphisms using RAPDPCR in penaeid prawns Penaeus japonicus and Metapenaeusensis. Fisheries Sci., 63, 149-150.

Mishra, P.S., Chaudhari, A., Krishna, G., Kumar, D. and Lakra, W.S. (2009) Genetic diversity in Metapenaeus dobsonii using RAPD analysis. Biochem Genet. 47, 421-426.

Nei, M.(1973) Analysis of gene diversity in subdivided populations. Pmc. Natl. Acad. Sci. (United States of America). 70, 3321-3323.

Quattro, J. M. and Vrijenhoek, R. C. (1989) Fitness differences among remnant populations of endangered Sonoran topmlnnow. Science, 245 976-978.

Rahman, S.N., Islam, M.S., Alam, M.S., and Nasiruddin, K.M. (2007) Genetic polymorphism In rice (Oryza sativa L.) through RAPD analysis. Indi. J. BiotechnoL, 6, 224-229.

Ruzzante, D.E., Taggart, C.T., Cook, D. and Goddard, S.V. (1996) Genetic differentiation between inshore and offshore Atlantic cod {Gadus morhua L.) off Newfoundland: Microsatellite DNA variation and antifreeze level. Can. J. Fish. Aquat. Sci., 53,634645.

Ryman, N. (1983) Patterns of distribution of biochemical genetic variation in salmonids: differences between species. Aquaculture, 33, 1-21.

Vishwanath, W., Lakra, W.S. and Sarkar, U.K. (2007) Fishes of North Eastlndia. 1-264 pp. National Bureau of Fish Genetic Resources, Lucknow, India.

Welsh, J. and McClelland, M. (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18, 7213-7218.

Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A. and Tingey, S.V. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic makers. Nucleic Acids Res. 18, 65316535.

Wirgin, I. I., . Stabile, J. E and Waldman, J. R. (1997) Molecular analysis in the conservation of sturgeons and paddlefish. Eviron. Biol. Fishes. 48, 385-398.

Yeh, F.C., Yang, R.C., Boyle, T.B. J., Ye, Z.H. and Mao, J.X. (1999) POPGENE, the user-friendly shareware for population genetic analysis.Molecular Biology and Biotechnology centre, university of Alberta, Canada.