Insights into Rhizospheric Bacterial Abundance of Bruguiera gymnorhiza (l.) LAM. from the Indian Sunderbans

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Authors

  • Rajdeep Das
     Department of Botany, Lady Brabourne College, Kolkata-700017, West Bengal ,IN
  • Bidisha Mallick
     Department of Botany, Lady Brabourne College, Kolkata-700017, West Bengal ,IN
  • Debleena Roy
     Department of Botany, Lady Brabourne College, Kolkata-700017, West Bengal ,IN
  • Suchita Sinha
     Department of Botany, Lady Brabourne College, Kolkata-700017, West Bengal ,IN
  • Rajat Banerjee
     Department of Biotechnology, University of Calcutta, Kolkata-700019, West Bengal ,IN
  • Sayak Ganguli
     Department of Biotechnology, St. Xavier’s College, Kolkata-700016, West Bengal ,IN

Keywords:

Bruguiera gymnorhiza, Metagenomics, Microbiome, Oxford Nanopore, 16s rRNA

Abstract

The sturdiness of mangrove plants, such as Bruguiera gymnorhiza (L.) Lam, has been related to their inherent physiological resistance and beneficial interactions with associated and specific microbial communities. Development in metagenomics provides a more complete picture of rhizosphere microbiome. In this work we analysed bacterial community of ischolar_main rhizosphere of B. gymnorhiza using 16s rRNA metagenome next generation sequencing (Oxford Nanopore minion platfrom) and found Candidatus, Ectothiorhodospira, Holophaga, Nitrospira, Pelagibius, Sulfitobacter, Thioalkalivibrio, Vicinamibacter, Woeseia to be most abundant genera, which provides a new insight into the functional and microbial diversity of the rhizospheric assemblage of the plant under study.

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Published

2020-06-01

Issue

Volume 17, Issue 1, June 2020

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Articles

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